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Large-Scale DGP Emulation

Source: vignettes/large_scale_emulation.Rmd
large_scale_emulation.Rmd

This vignette gives a demonstration of the package on DGP emulation of large-scale datasets.

Load the packages

Construct a synthetic simulator

We consider a 2-dimensional synthetic simulator with the following functional form defined over [0, 1] and [0, 1]:

f <- function(x) {
  x1 <- x[,1,drop=F] * 4 -2
  x2 <- x[,2,drop=F] * 4 -2
  y <- 0.5 + ((sin(x1^2-x2^2))^2 - 0.5)/(1 + 0.001*(x1^2+x2^2))^2
  return(y)
 }

We now specify a seed with set_seed() from the package for reproducibility

set_seed(9999)

and generate 3000 training data points:

X <- randomLHS(3000, 2)
Y <- f(X)

Training

We now build and train a large-scale DGP emulator using a Vecchia implementation under our Stochastic Imputation (SI) framework:

m <- dgp(X, Y, vecchia = TRUE)
## Auto-generating a 2-layered DGP structure ... done
## Initializing the DGP emulator ... done
## Training the DGP emulator: 
## Iteration 200: Layer 2: 100%|██████████| 200/200 [02:59<00:00,  1.12it/s]
## Imputing ... done

Validation

After we have the emulator, we can validate it by the Leave-One-Out (LOO) cross validation plot:

plot(m)
## Validating and computing ... done
## Post-processing LOO results ... done
## Plotting ... done

or the Out-Of-Sample (OOS) validation plot over 1000 randomly generated testing locations:

oos_x <- randomLHS(1000, 2)
oos_y <- f(oos_x)
plot(m, oos_x, oos_y)
## Validating and computing ... done
## Post-processing OOS results ... done
## Plotting ... done

Note that gp() can also operate in Vecchia mode. For this problem, using m_gp <- gp(X, Y, vecchia = TRUE), we found that the GP emulator m_gp achieved half the NRMSE of the DGP emulator m, but it had a few more points outside the credible intervals.

Performance tip

The Vecchia implementation in the package leverages the multiple cores available on the machine for multi-thread computation. To optimize performance, we recommend experimenting with the number of threads using set_thread_num(). The current number of threads being used by the package can be checked with get_thread_num().